Auteurs : Lambert, Amaury (Auteur de la Conférence)
CIRM (Editeur )
Résumé :
A popular line of research in evolutionary biology is to use time-calibrated phylogenies in order to infer the underlying diversification process. This involves the use of stochastic models of ultrametric trees, i.e., trees whose tips lie at the same distance from the root. We recast some well-known models of ultrametric trees (infinite regular trees, exchangeable coalescents, coalescent point processes) in the framework of so-called comb metric spaces and give some applications of coalescent point processes to the phylogeny of bird species.
However, these models of diversification assume that species are exchangeable particles, and this always leads to the same (Yule) tree shape in distribution. Here, we propose a non-exchangeable, individual-based, point mutation model of diversification, where interspecific pairwise competition is only felt from the part of individuals belonging to younger species. As the initial (meta)population size grows to infinity, the properly rescaled dynamics of species lineages converge to a one-parameter family of coalescent trees interpolating between the caterpillar tree and the Kingman coalescent.
Keywords: ultrametric tree, inference, phylogenetic tree, phylogeny, birth-death process, population dynamics, evolution
Codes MSC :
54E45
- Compact (locally compact) metric spaces
54E70
- Probabilistic metric spaces
60J80
- Branching processes (Galton-Watson, birth-and-death, etc.)
60J85
- Applications of branching processes
92D15
- Problems related to evolution
92D25
- Population dynamics (general)
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Informations sur la Rencontre
Nom de la rencontre : Probability and biological evolution / Probabilités et évolution biologique Organisateurs de la rencontre : Pardoux, Etienne ; Wakolbinger, Anton Dates : 15/06/15 - 19/06/15
Année de la rencontre : 2015
URL Congrès : http://conferences.cirm-math.fr/1112.html
DOI : 10.24350/CIRM.V.18772603
Citer cette vidéo:
Lambert, Amaury (2015). A non exchangeable coalescent arising in phylogenetics. CIRM. Audiovisual resource. doi:10.24350/CIRM.V.18772603
URI : http://dx.doi.org/10.24350/CIRM.V.18772603
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