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RNA design in theory and practice
Multi angle
Authors : Findeiss, Sven (Author of the conference)
CIRM (Publisher )
68Q10 - Modes of computation (nondeterministic, parallel, interactive, probabilistic, etc.)
92C40 - Biochemistry, molecular biology
92D20 - Protein sequences, DNA sequences
92E10 - Molecular structure (graph-theoretic methods, methods of differential topology, etc.)
Additional resources :
https://www.cirm-math.fr/ProgWeebly/2019/Renc1999/Findeiss.pdf
https://www.cirm-math.fr/ProgWeebly/2019/Renc1999/FindeissTuto.pdf
CIRM (Publisher )
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Abstract :
Keywords : RNA structure; RNA folding; RNA secondary structure prediction; RNA switches; sequence design
MSC Codes : 68Q10 - Modes of computation (nondeterministic, parallel, interactive, probabilistic, etc.)
92C40 - Biochemistry, molecular biology
92D20 - Protein sequences, DNA sequences
92E10 - Molecular structure (graph-theoretic methods, methods of differential topology, etc.)
Additional resources :
https://www.cirm-math.fr/ProgWeebly/2019/Renc1999/Findeiss.pdf
https://www.cirm-math.fr/ProgWeebly/2019/Renc1999/FindeissTuto.pdf
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Information on the Video
Film maker : Hennenfent, GuillaumeLanguage : English Available date : 23/01/2019 Conference Date : 16/01/2019 Subseries : Research School arXiv category : Quantitative Biology ; Computer Science Mathematical Area(s) : Mathematics in Science & Technology ; Computer Science Format : MP4 (.mp4) - HD Video Time : 01:31:18 Targeted Audience : Researchers ; Graduate Students Download : https://videos.cirm-math.fr/2019-01-16_Findeiss.mp4 
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Information on the Event
Event Title : AlgoSB 2019 - Mathematical and computational methods for structured RiboNucleic Acids / AlgoSB 2019 - Méthodes mathématiques et informatiques pour les Acides RiboNucléiques structurésEvent Organizers : Ponty, Yann ; Tanzer, Andrea Dates : 14/01/2019 - 18/01/2019 Event Year : 2019 Event URL : https://conferences.cirm-math.fr/1999.html
Citation Data
DOI : 10.24350/CIRM.V.19487603Cite this video as: Findeiss, Sven (2019). RNA design in theory and practice. CIRM. Audiovisual resource. doi:10.24350/CIRM.V.19487603 URI : http://dx.doi.org/10.24350/CIRM.V.19487603 |
See Also
- [Multi angle] Comparative methods for RNA structure analysis - Part 2 / Author of the conference Will, Sebastian.
- [Multi angle] Comparative methods for RNA structure analysis - Part 1 / Author of the conference Will, Sebastian.
- [Multi angle] RNA secondary structures / Author of the conference Hofacker, Ivo.
- [Post-edited] Improving RNA secondary structure prediction / Author of the conference Lorenz, Ronny.
Bibliography
- Flamm, C., Hofacker, I.L., Maurer-Stroh, S., & Stadler, P.F. (2001). Design of multistable RNA molecules. RNA, 7(2), 254-256 - https://www.cambridge.org/core/journals/rna/article/design-of-multistable-rna-molecules/64FE864A20926B3C6D19AEEEEF0C6FC3
- Green, A.A., Silver, P.A., Collins, J.J., & Yin, P. (2014). Toehold switches: de-novo-designed regulators of gene expression. Cell, 159(4), 925–939 - https://doi.org/10.1016/j.cell.2014.10.002
- Hammer, S., Tschiatschek, B., Flamm, C., Hofacker, I.L., & Findeiss, S. (2017). RNAblueprint: flexible multiple target nucleic acid sequence design. Bioinformatics, 33(18), 2850-2858 - https://doi.org/10.1093/bioinformatics/btx263
- Zadeh, J.N., Wolfe, B.R., & Pierce, N.A. (2011). Nucleic acid sequence design via efficient ensemble defect optimization. Journal of Computational Chemistry, 32(3), 439–452 - https://doi.org/10.1002/jcc.21633
